FOXHOUND Rebellion

The night before the signing of the START III Accord, a nuclear weapons facility on Shadow Moses Island, off the coast of Alaska, was captured by the Next-Generation Special Forces, led by members of FOXHOUND. Under the command of Liquid Snake, FOXHOUND and the NGSF formed the Sons of Big Boss, and initiated an armed revolt against the United States Government. In addition, they also held hostages on the island, including the DARPA Chief Donald Anderson and ArmsTech President Kenneth Baker, both of whom also carried the PAL override codes.

Threatening the White House with a nuclear strike, the Sons of Big Boss demanded that the government hand over the remains of Big Boss, giving them a deadline of 24 hours. In addition, the Sons of Big Boss, to prove that they weren't bluffing about their capability of supplying a nuclear strike, also supplied the serial number to the U.S. Government. The Genome Soldiers of the NGSF had been subject to advanced gene therapy, involving the use of Big Boss's "soldier genes" to enhance their combat skills and senses. Big Boss's DNA was considered to be a priceless treasure to the U.S. military, and the government could not allow it fall into the wrong hands.

The Inflitration and Rebellion
Snake is sent by Roy Campbell under Jim Houseman and sent it to stop the terrorist. He manages to fight through all his opponents, Ocelot also acted upon WOLFHOUND to kill both Donald Anderson and arrange for the appearance of Gray Fox. Gray Fox, Kenneth Baker all lose their lives in helping Snake and Snake manages to disable REX and all its data is given to Solidus Snake. Emerging Victorious Snake joins WOLFHOUND with Otacon and becomes powerful soldiers taking on their ultimate enemy the patriots.